program seqman dna star lasergene software package Search Results


seqman  (DNASTAR)
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DNASTAR seqman
Seqman, supplied by DNASTAR, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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lasergene sequence analysis  (DNASTAR)
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DNASTAR lasergene sequence analysis
Lasergene Sequence Analysis, supplied by DNASTAR, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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lasergene sequence analysis - by Bioz Stars, 2026-05
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megalign dna star software  (DNASTAR)
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DNASTAR megalign dna star software
Megalign Dna Star Software, supplied by DNASTAR, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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megalign dna star software - by Bioz Stars, 2026-05
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dna/rna purification beads  (SeqMatic LLC)
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SeqMatic LLC dna/rna purification beads
Dna/Rna Purification Beads, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dna star seqman ngen software  (DNASTAR)
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DNASTAR dna star seqman ngen software
Dna Star Seqman Ngen Software, supplied by DNASTAR, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dna star seqman ngen software - by Bioz Stars, 2026-05
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illumina miseq  (SeqMatic LLC)
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SeqMatic LLC illumina miseq
Illumina Miseq, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dnase treatment  (SeqMatic LLC)
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SeqMatic LLC dnase treatment
Dnase Treatment, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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16s rrna gene deep sequencing  (SeqMatic LLC)
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SeqMatic LLC 16s rrna gene deep sequencing
16s Rrna Gene Deep Sequencing, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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3′-dna adapters  (SeqMatic LLC)
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SeqMatic LLC 3′-dna adapters
Over-representation of repetitive elements in OS compared to control EV preparations in a validation cohort. ( a ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 by RT-qPCR of control (n = 6–11) and OS (n = 7–8) serum EV preparations. RT-qPCR was normalized against C. elegans external spike-in miR-39–3p RNA. White lines represent median. ( b ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie <t>3</t> <t>DNA</t> by qPCR, in the absence of reverse transcription, in control (n = 12) and OS (n = 8) serum EV preparations. qPCR was performed on equal proportions of nucleic acid extracted from 200 ul of OS and control serum. White lines represent median. ( c ) Diagnostic value of HSATI , HSATII , L1P1 and Charlie 3 DNA sequences in serum OS preparations. ROC curves were generated using data in ( b ). Groups were compared using two ‐ tailed, unpaired, Mann Whitney U test; * p < 0.05; ** p < 0.01; *** p < 0.001.
3′ Dna Adapters, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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cdna library construction sequencing  (SeqMatic LLC)
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SeqMatic LLC cdna library construction sequencing
Over-representation of repetitive elements in OS compared to control EV preparations in a validation cohort. ( a ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 by RT-qPCR of control (n = 6–11) and OS (n = 7–8) serum EV preparations. RT-qPCR was normalized against C. elegans external spike-in miR-39–3p RNA. White lines represent median. ( b ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie <t>3</t> <t>DNA</t> by qPCR, in the absence of reverse transcription, in control (n = 12) and OS (n = 8) serum EV preparations. qPCR was performed on equal proportions of nucleic acid extracted from 200 ul of OS and control serum. White lines represent median. ( c ) Diagnostic value of HSATI , HSATII , L1P1 and Charlie 3 DNA sequences in serum OS preparations. ROC curves were generated using data in ( b ). Groups were compared using two ‐ tailed, unpaired, Mann Whitney U test; * p < 0.05; ** p < 0.01; *** p < 0.001.
Cdna Library Construction Sequencing, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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enzymatic dna extraction  (SeqMatic LLC)
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SeqMatic LLC enzymatic dna extraction
Over-representation of repetitive elements in OS compared to control EV preparations in a validation cohort. ( a ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 by RT-qPCR of control (n = 6–11) and OS (n = 7–8) serum EV preparations. RT-qPCR was normalized against C. elegans external spike-in miR-39–3p RNA. White lines represent median. ( b ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie <t>3</t> <t>DNA</t> by qPCR, in the absence of reverse transcription, in control (n = 12) and OS (n = 8) serum EV preparations. qPCR was performed on equal proportions of nucleic acid extracted from 200 ul of OS and control serum. White lines represent median. ( c ) Diagnostic value of HSATI , HSATII , L1P1 and Charlie 3 DNA sequences in serum OS preparations. ROC curves were generated using data in ( b ). Groups were compared using two ‐ tailed, unpaired, Mann Whitney U test; * p < 0.05; ** p < 0.01; *** p < 0.001.
Enzymatic Dna Extraction, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ribosomal rna depletion  (SeqMatic LLC)
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SeqMatic LLC ribosomal rna depletion
Over-representation of repetitive elements in OS compared to control EV preparations in a validation cohort. ( a ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 by RT-qPCR of control (n = 6–11) and OS (n = 7–8) serum EV preparations. RT-qPCR was normalized against C. elegans external spike-in miR-39–3p RNA. White lines represent median. ( b ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie <t>3</t> <t>DNA</t> by qPCR, in the absence of reverse transcription, in control (n = 12) and OS (n = 8) serum EV preparations. qPCR was performed on equal proportions of nucleic acid extracted from 200 ul of OS and control serum. White lines represent median. ( c ) Diagnostic value of HSATI , HSATII , L1P1 and Charlie 3 DNA sequences in serum OS preparations. ROC curves were generated using data in ( b ). Groups were compared using two ‐ tailed, unpaired, Mann Whitney U test; * p < 0.05; ** p < 0.01; *** p < 0.001.
Ribosomal Rna Depletion, supplied by SeqMatic LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Over-representation of repetitive elements in OS compared to control EV preparations in a validation cohort. ( a ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 by RT-qPCR of control (n = 6–11) and OS (n = 7–8) serum EV preparations. RT-qPCR was normalized against C. elegans external spike-in miR-39–3p RNA. White lines represent median. ( b ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 DNA by qPCR, in the absence of reverse transcription, in control (n = 12) and OS (n = 8) serum EV preparations. qPCR was performed on equal proportions of nucleic acid extracted from 200 ul of OS and control serum. White lines represent median. ( c ) Diagnostic value of HSATI , HSATII , L1P1 and Charlie 3 DNA sequences in serum OS preparations. ROC curves were generated using data in ( b ). Groups were compared using two ‐ tailed, unpaired, Mann Whitney U test; * p < 0.05; ** p < 0.01; *** p < 0.001.

Journal: Scientific Reports

Article Title: Extracellular vesicle-associated repetitive element DNAs as candidate osteosarcoma biomarkers

doi: 10.1038/s41598-020-77398-z

Figure Lengend Snippet: Over-representation of repetitive elements in OS compared to control EV preparations in a validation cohort. ( a ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 by RT-qPCR of control (n = 6–11) and OS (n = 7–8) serum EV preparations. RT-qPCR was normalized against C. elegans external spike-in miR-39–3p RNA. White lines represent median. ( b ) Violin plots representing relative abundance of HSATI , HSATII , L1P1 and Charlie 3 DNA by qPCR, in the absence of reverse transcription, in control (n = 12) and OS (n = 8) serum EV preparations. qPCR was performed on equal proportions of nucleic acid extracted from 200 ul of OS and control serum. White lines represent median. ( c ) Diagnostic value of HSATI , HSATII , L1P1 and Charlie 3 DNA sequences in serum OS preparations. ROC curves were generated using data in ( b ). Groups were compared using two ‐ tailed, unpaired, Mann Whitney U test; * p < 0.05; ** p < 0.01; *** p < 0.001.

Article Snippet: 5′-RNA adapters and 3′-DNA adapters (SeqMatic, personal communication) were directly ligated to nucleic acid substrates, followed by PCR amplification.

Techniques: Quantitative RT-PCR, Diagnostic Assay, Generated, Two Tailed Test, MANN-WHITNEY